Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs381115 chr1:153099345 C/T 2.66E-5 515 22.87 18.82 14.13 KM Plot
HNSC rs3821368 chr1:26627801 G/A 5.07E-6 515 7.23 21.57 22.02 KM Plot
HNSC rs3838582 chr2:100031110 CTT/C 3.04E-8 515 22.5 20.15 7 KM Plot
HNSC rs3843530 chr7:64732388 A/G 1.87E-5 515 9.27 21.07 22.82 KM Plot
HNSC rs4060115 chr1:26596518 T/C 1.8E-5 514 6.8 20.58 22.17 KM Plot
HNSC rs4233459 chr1:26626749 T/C 5.12E-6 514 7.23 21.37 22.02 KM Plot
HNSC rs4234191 chr3:75025978 A/C 1.95E-5 515 7.22 21.62 21.8 KM Plot
HNSC rs4274051 chr1:26571811 A/G 1.68E-5 514 6.8 21.37 22.1 KM Plot
HNSC rs4290051 chr1:26624327 A/G 5.28E-6 515 22.1 21.37 7.23 KM Plot
HNSC rs4291487 chr1:26627283 A/G 4.89E-6 515 7.23 21.57 22.02 KM Plot
HNSC rs4310061 chr6:15259168 A/G 4.24E-5 515 9.43 19.73 22.78 KM Plot
HNSC rs4359849 chr4:140390681 A/G 4.99E-6 493 18.15 26.87 20.63 KM Plot
HNSC rs4512634 chr1:26575695 T/C 1.75E-5 515 6.8 20.58 22.1 KM Plot
HNSC rs4522654 chr2:99910126 G/A 9.2E-7 513 7 20.77 22.27 KM Plot
HNSC rs4540261 chr6:39448389 C/T 3.26E-5 515 21.5 24.07 14.97 KM Plot